1. Combine apple and 1/4 cup water in a small skillet; bring to a boil.
2. Stir in cinnamon, nutmeg, and cloves; cover, reduce heat, and simmer for 4 minutes or just until crisp-tender. Remove from heat; uncover and let stand.
3. Bring 1 cup of water and 1 cup of water to a boil in a large saucepan over a high heat; stir in the quinoa flakes and sea salt.
4. Cook for 3 minutes, stirring frequently. Remove from heat and let stand until slightly thickened.
5. While the quinoa stands, return the apple mixture to a medium heat; add the raw honey and vanilla, stirring well. Serve apple mixture over cereal.